Keeping Aligners and Your Mouth Clean: What the Latest Research Says

Introduction

Orthodontic aligners are becoming more popular than traditional braces. They are comfortable, removable, and less noticeable. But while they look simple, they come with one major responsibility—keeping both your teeth and the aligners clean. A recent scientific review looked at how people clean their aligners at home and what methods work best. This blog summarizes the key findings so both patients and doctors can make informed decisions.

What the study looked at

The study was a systematic review. That means researchers gathered all the high-quality studies on a specific topic—in this case, how well different home cleaning routines for orthodontic aligners and oral hygiene work. They analyzed 11 studies, which included:
  • Randomized controlled trials
  • Cross-sectional studies
  • Observational studies
The researchers compared different cleaning methods used by patients with invisible aligners and those with fixed braces. They also looked at various ways of disinfecting the aligners themselves.

What the researchers found

Aligners and biofilm

Aligners are made from thermoplastic material that covers the entire tooth surface. Because of this, plaque and bacterial biofilm can easily build up. If not cleaned properly, this biofilm can cause gum problems, bad breath, and even increase the risk of cavities or gum disease. The studies found that mechanical and chemical cleaning methods work best when used together. Just rinsing aligners with water was the least effective method.

The most effective aligner cleaning methods included:

    • Soaking the aligners in tablets containing sodium carbonate and sodium sulfate

    • Brushing with a soft toothbrush and using a non-abrasive toothpaste

  • Using ultrasonic or vibrating baths with cleaning solutions

Aligners cleaned with a combination of brushing and soaking showed the lowest levels of bacteria.

Oral hygiene with aligners vs braces

Patients with clear aligners generally had better oral health than those with fixed braces. This is because aligners can be removed while brushing and flossing.

Key findings include:

  • Less gum bleeding and plaque buildup in aligner users
  • Lower levels of harmful bacteria in patients using proper hygiene protocols
  • More flexible cleaning routines compared to fixed braces

However, just using a toothbrush may not be enough. The most effective protocols used additional tools like floss, interdental brushes, and in some cases, water flossers or sonic toothbrushes.

What it means for doctors

For dental professionals, this review reinforces the importance of customizing oral hygiene instructions for aligner patients. Here are key takeaways:

  • Recommend both mechanical and chemical methods to clean aligners.
  • Educate patients about why aligners need more than just rinsing.
  • Monitor patient compliance and consider revising home care protocols if plaque or gum issues arise.
  • Encourage use of special tools like Thermoseal soft toothbrushes, floss, and possibly ultrasonic cleaners.

Also, because some studies showed low-quality evidence due to design limitations, further research is still needed.

What it means for patients

If you’re wearing clear aligners, keeping your mouth and trays clean is your daily job. Here’s how to do it well:
1. Donʼt rely on water alone. Rinse, but also brush your aligners daily with a soft toothbrush.
2. Use cleaning tablets (eg. Clinsodent tablets) at least once a day. They help reduce bacteria that brushing alone canʼt remove.
3. Brush and floss your teeth every time before putting your aligners back in.
4. Consider a water flosser or electric toothbrush if you find it hard to clean well.
5. Replace aligners on schedule, and donʼt wear dirty ones longer than recommended.

Your aligners are close to your teeth all day, so any bacteria that grow there can directly affect your gums and enamel.

Final takeaway

Aligners offer comfort and aesthetics, but they demand good hygiene. This review shows that the best results come from combining mechanical and chemical cleaning methods. Whether youʼre a doctor advising patients or
someone undergoing aligner treatment, knowing how to care for the trays and your teeth is crucial.
Clear aligners donʼt clean themselves—your daily routine does the job.

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